Soybean Stem Diseases


Now is the time of year when soybean stem diseases become the most noticeable. These are the diseases that we are currently most concerned about when it comes to real yield loss in soybeans in our production zone. Right now, in fact, is when the second round of the Soybean Disease Survey, focused on stem diseases, is being conducted to get a feel for the presence and severity of these diseases. So let’s take a quick look at each of the guilty parties:

White Mold (Sclerotinia)

White mould can cause 2-5 bu/ac of yield loss for every 10% increase in incidence (% of plants affected) of early plant infections. Cool, wet conditions throughout July and August and a dense crop canopy favour disease development. Infection begins low in the canopy at nodes along the stem. Crops grown on high N land (such as previously manured ground) can be more susceptible to the disease because of excessive canopy growth.

Symptoms may first be noticed from afar as lodged plants or wilted, drying leaves at the top of the canopy. Inside the canopy, symptoms may appear as white mycelium (mouldy growth) along the stem, with black sclerotia bodies inside the stem.

Wilted plants due to white mold noticeably sticking out of soybean canopy
Early lower canopy infect of a soybean plant by white mold

Phytophthora Root Rot (Phytopthora sojae)

Phytophthora root rot (PRR) is considered both a root and stem disease. Late-season infection of PRR appears as a chocolate-brown lesion on the stem that extends upward from the soil line. In some cases, this lesion may develop up one side of the plant only. Dig up roots to confirm. If roots appear rotten (e.g., root mass is reduced and discoloured, nodulation is minimal), it is likely PRR. If a stem lesion is present and roots appear healthy, it may be another stem disease like northern stem canker or pod/stem blight.

Internal stem will also have brown discolouration and plants will pull easily from the soil. Other symptoms may include include stunting, yellowing plant tissue and wilted leaves remaining attached to the plant. Infected plants may occur in patches or at random among healthy plants. This disease can affect plants at all stages, but it is easier to identify at reproductive stages. Foliar fungicide will not salvage infected plant tissue.

Chocolate-brown stem lesion caused by PRR
Above and below ground symptoms of PRR – note stunted roots with no nodulation.

Northern Stem Canker (Diaporthe caulivora, D. aspalathi)

Initial symptoms typically appear on the lower third of the stem shortly after flowering. The disease begins as small, reddish-brown lesions at the base of a branch or leaf petiole. These lesions then expand to form slightly sunken cankers that are reddish-brown with reddish margins. Cankers may span several nodes on the main stem. Stem canker may at first resemble Phytophthora root and stem rot, where lesions wrap around the stem and extend to the soil line. However, plant roots will appear healthier than those infected by Phytophthora.

Stem canker is found each year in Manitoba, but its incidence is currently low.

Lesions on the stem and nodes caused by Northern Stem Canker
Stem lesion caused by Northen Stem Canker – note roots look relatively healthy compared to PRR symptoms

Pod and Stem Blight (Diaporthe phaseolorum var. sojae)

Pod and stem blight is present in Manitoba, but at low levels. It is identified by distinct lines of raised, black dots (pycnidia) on infected stems, pods and petioles.

Seed infection (Phomopsis seed decay) only occurs if pods are affected, which can reduce seed quality. Symptoms may be easier to detect in August through September when soybean plants are maturing.

Pod and stem blight symptoms Photo: University of Wisconsin

Anthracnose (Colletotrichum truncatum)

Anthracnose is less common in Manitoba-grown soybeans. It appears as reddish-brown irregularly-shaped blotches on the leaves, stems and petioles. Black fungal bodies develop in these blotches later in the season. Leaf symptoms include reddish veins. Leaf petioles may also become twisted and bent into a Shepherd’s crook, resulting in early defoliation.

Anthracnose lesions on soybean stems Photo: University of Iowa

Sudden Death Syndrome (Fusarium virguliforme)

Sudden death syndrome (SDS) infects roots early in the growing season, but foliar symptoms usually appear after flowering. Interveinal leaf chlorosis becomes necrotic, then leaves eventually die and prematurely fall from the plant leaving the petiole attached. Fields infested with SCN can increase the severity of SDS symptoms.

Sudden Death Syndrome lesions on soybean leaf

For more information and images of all diseases listed here, check out the Crop Protection Network Scouting for Stem Diseases publication. More information on these diseases can also be found on the Crop Protection Network publication database – Scouting for Soybean Stem Diseases.